Mercurial > repos > jay > pdaug_tsvtofasta

annotate PDAUG_Merge_Dataframes/PDAUG_Merge_Dataframes.py @ 5:f93187136dfb draft

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"planemo upload for repository https://github.com/jaidevjoshi83/pdaug commit edb37634e419f75dd66292e712de51278746d883"
author jay
date Wed, 30 Dec 2020 02:42:16 +0000
parents c3f0b3a6339e
children 391e7e836fe9
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1 import glob
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2 import pandas as pd
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3 import sys
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5 files = sys.argv[1]
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6 out_file = sys.argv[2]
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9 data_frame = pd.read_csv(files.split(',')[0],sep='\t')
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12 for file in files.split(',')[1:]:
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14 df1 = pd.read_csv(file,sep='\t')
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15 data_frame = pd.concat([data_frame,df1])
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17 final_DF = data_frame.fillna(0)
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19 final_DF.to_csv(out_file,sep="\t", index=False)
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