Mercurial > repos > jay > pdaug_tsvtofasta
comparison PDAUG_Merge_Dataframes/PDAUG_Merge_Dataframes.py @ 0:c3f0b3a6339e draft
"planemo upload for repository https://github.com/jaidevjoshi83/pdaug commit a9bd83f6a1afa6338cb6e4358b63ebff5bed155e"
| author | jay |
|---|---|
| date | Wed, 28 Oct 2020 01:47:48 +0000 |
| parents | |
| children | 391e7e836fe9 |
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| -1:000000000000 | 0:c3f0b3a6339e |
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| 1 import glob | |
| 2 import pandas as pd | |
| 3 import sys | |
| 4 | |
| 5 files = sys.argv[1] | |
| 6 out_file = sys.argv[2] | |
| 7 | |
| 8 | |
| 9 data_frame = pd.read_csv(files.split(',')[0],sep='\t') | |
| 10 | |
| 11 | |
| 12 for file in files.split(',')[1:]: | |
| 13 | |
| 14 df1 = pd.read_csv(file,sep='\t') | |
| 15 data_frame = pd.concat([data_frame,df1]) | |
| 16 | |
| 17 final_DF = data_frame.fillna(0) | |
| 18 | |
| 19 final_DF.to_csv(out_file,sep="\t", index=False) | |
| 20 | |
| 21 | |
| 22 | |
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| 28 |