Mercurial > repos > jay > pdaug_tsvtofasta

view PDAUG_Merge_Dataframes/PDAUG_Merge_Dataframes.py @ 2:728e1fb64e91 draft

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"planemo upload for repository https://github.com/jaidevjoshi83/pdaug commit 398e58899356c3f437267285021f15dfd168f249"
author jay
date Fri, 27 Nov 2020 22:37:57 +0000
parents c3f0b3a6339e
children 391e7e836fe9
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import glob
import pandas as pd 
import sys

files = sys.argv[1]
out_file = sys.argv[2]


data_frame = pd.read_csv(files.split(',')[0],sep='\t')


for file in files.split(',')[1:]: 

    df1 = pd.read_csv(file,sep='\t')
    data_frame =  pd.concat([data_frame,df1])

final_DF = data_frame.fillna(0)

final_DF.to_csv(out_file,sep="\t", index=False)