--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/PDAUG_Uversky_Plot/PDAUG_Uversky_Plot.xml	Wed Oct 28 01:56:46 2020 +0000
@@ -0,0 +1,78 @@
+<tool id="pdaug_uversky_plot" name="PDAUG Uversky Plot" version="0.1.0" python_template_version="3.6">
+    <description>Uversky plot to analyze ordered and disordered proteins</description>
+    
+    <requirements>
+      <requirement type="package" version="2.7.18">python</requirement>
+      <requirement type="package" version="1.4.6">powerlaw</requirement>
+      <requirement type="package" version="0.2.4">quantiprot</requirement>
+    </requirements>
+
+    <command detect_errors="exit_code"><![CDATA[
+
+        python '$__tool_directory__/PDAUG_Uversky_Plot.py'  --Fasta1 '$input1' --Fasta2 '$input2' --OutFile 'out.png' 
+             
+    ]]></command>
+
+    <inputs>
+      <param name="input1" type="data" format="fasta" label="First fasta file" argument= "--Fasta1" help="First fasta file with Peptides"/>
+      <param name="input2" type="data" format="fasta" label="Second fasta file" argument="--Fasta2"  help="Second fasta file with Peptides"/>
+    </inputs>
+
+    <outputs>   
+        <data name='output2' format='png' label="${tool.name} on $on_string - (PNG)" from_work_dir="out.png"/>
+    </outputs>
+ 
+    <tests>
+        <test>
+            <param name="input1" value="test1.fasta"/>
+            <param name="input2" value="test2.fasta"/>
+            <output name="output2" file="out.png"/>
+        </test>
+    </tests>
+
+    <help><![CDATA[
+.. class:: infomark
+
+**What it does**
+
+This plot divides analyze peptide sequences on globular and IDP subsets based on their mean net charge versus mean hydropathy. The line represents the permeable boundary between both subsets.
+
+-----
+
+**Inputs**
+    * **--Fasta1** The first fasta file.
+    * **--Fasta2** The second fasta file.
+
+-----
+
+**Outputs**
+    * Return html file.]]></help>
+<citations>
+  <citation type="bibtex">
+    @misc{PDAUGGITHUB, 
+      author = {Joshi, Jayadev  and Blankenberg, Daniel}, 
+      year = {2020}, 
+      title ={PDAUG - a Galaxy based toolset for peptide library analysis, visualization, and machine learning modeling}, 
+      publisher = {GitHub}, 
+      journal = {GitHub repository}, 
+      url =
+      {https://github.com/jaidevjoshi83/pdaug.git}, 
+      }
+  </citation>
+
+  <citation type="bibtex">
+    @article{konopka_marciniak_dyrka_2017,
+       title={Quantiprot - a Python package for quantitative analysis of protein sequences}, 
+       volume={18},
+       DOI={10.1186/s12859-017-1751-4}, 
+       number={1}, 
+       journal={BMC Bioinformatics},
+       author={Konopka, Bogumił M. and Marciniak, Marta and Dyrka, Witold}, 
+       year={2017}
+     }
+  </citation>
+</citations>
+</tool>
+
+
+