Mercurial > repos > jay > pdaug_word_vector_model
diff PDAUG_Word_Vector_Model/PDAUG_Word_Vector_Model.xml @ 5:c6a1b09d8846 draft
"planemo upload for repository https://github.com/jaidevjoshi83/pdaug commit ac4353ca5c0ac9ce60df9f4bf160ed08b99fbee3"
| author | jay |
|---|---|
| date | Thu, 28 Jan 2021 04:16:01 +0000 |
| parents | 3ce435b8d648 |
| children | d739a3bc7e39 |
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--- a/PDAUG_Word_Vector_Model/PDAUG_Word_Vector_Model.xml Tue Jan 12 19:35:15 2021 +0000 +++ b/PDAUG_Word_Vector_Model/PDAUG_Word_Vector_Model.xml Thu Jan 28 04:16:01 2021 +0000 @@ -13,7 +13,7 @@ </stdio> <command detect_errors="exit_code"><![CDATA[ - python '$__tool_directory__/PDAUG_Word_Vector_Model.py' -I '$input' -M '$meanCount' -W '$window' -O '$OutFile' + python '$__tool_directory__/PDAUG_Word_Vector_Model.py' -I '$input' -M '$meanCount' -W '$window' -O '$OutFile' --SG '$sg' ]]></command> @@ -21,6 +21,11 @@ <param name="input" type="data" label="Input fasta file" format="fasta" argument= "--Input" help="Input fasta file with peptides"/> <param name="meanCount" type="integer" label="Mean Count" value="0" format="fasta" argument= "--min_count" help="Ignores a all words with total frequency lower than this"/> <param name="window" type="integer" label="window" value="5" argument="--window" help="Maximum distance between the current and predicted word within a sentence"/> + <param name="sg" type="select" label="Select algorithm" help="Training algorithm skip-gram or CBOW."> + <option value="skip-gram">Skip-gram</option> + <option value="CBOW" >CBOW</option> + </param> + </inputs> <outputs> @@ -48,6 +53,7 @@ * **--Input** Fasta file with protein sequences. * **--min_count** Ignores all words with total frequency lower than this * **--window** Maximum distance between the current and predicted word within a sentence, accepts integer value. + * **--SG** Select training algorithm skip-gram or CBOW. -----