# HG changeset patch
# User jbarberoaparicio
# Date 1555493323 14400
# Node ID 2d4cb3b9d2d150454e9968eb56ba822c8f4f5439
# Parent  f7827647d49837d49839807d6fad7cceab4fa767
Uploaded

diff -r f7827647d498 -r 2d4cb3b9d2d1 roary/myTools/roary_tool.xml
--- a/roary/myTools/roary_tool.xml	Wed Apr 17 05:25:48 2019 -0400
+++ b/roary/myTools/roary_tool.xml	Wed Apr 17 05:28:43 2019 -0400
@@ -7,8 +7,8 @@
     
     <command detect_errors="exit_code"><![CDATA[
         
-        #for $counter, $gff in enumerate($gff_input)
-          cp $gff sample${gff}.gff &&
+        #for $counter, $gff in enumerate($gff_input.gffs)
+          cp $gff temp${counter}.gff &&
         #end for
                 
         roary
@@ -23,7 +23,7 @@
           -t '$advanced.trans_tab'
           -iv '$advanced.mcl'
           
-          sample*.gff
+          temp*.gff
           
     ]]></command>