# HG changeset patch
# User jbarberoaparicio
# Date 1555493507 14400
# Node ID 2e48cdd5ffff16eeb6d1c2a1f411f18331f52a6b
# Parent  2d4cb3b9d2d150454e9968eb56ba822c8f4f5439
Uploaded

diff -r 2d4cb3b9d2d1 -r 2e48cdd5ffff roary/myTools/roary_tool.xml
--- a/roary/myTools/roary_tool.xml	Wed Apr 17 05:28:43 2019 -0400
+++ b/roary/myTools/roary_tool.xml	Wed Apr 17 05:31:47 2019 -0400
@@ -8,7 +8,7 @@
     <command detect_errors="exit_code"><![CDATA[
         
         #for $counter, $gff in enumerate($gff_input.gffs)
-          cp $gff temp${counter}.gff &&
+          cp $gff sample${gff}.gff &&
         #end for
                 
         roary
@@ -23,7 +23,7 @@
           -t '$advanced.trans_tab'
           -iv '$advanced.mcl'
           
-          temp*.gff
+          sample*.gff
           
     ]]></command>