# HG changeset patch
# User jbarberoaparicio
# Date 1555503415 14400
# Node ID 34ccf9b4a504398b69a50ae6fb5d8aa88f135055
# Parent  112692d7c34abeab359d602ad5f0cf7912da9ffc
Uploaded

diff -r 112692d7c34a -r 34ccf9b4a504 roary/myTools/roary_tool.xml
--- a/roary/myTools/roary_tool.xml	Wed Apr 17 08:11:26 2019 -0400
+++ b/roary/myTools/roary_tool.xml	Wed Apr 17 08:16:55 2019 -0400
@@ -8,7 +8,7 @@
     <command detect_errors="exit_code"><![CDATA[
         
         #for $counter, $gff in enumerate($gff_input.gffs)
-          cp $gff ${gff}.gff &&
+          cp $gff sample${gff%%.*}.gff &&   
         #end for
                 
         roary