# HG changeset patch
# User jbarberoaparicio
# Date 1555580279 14400
# Node ID 6fd4d3fce2297ca44d295504377e96c8932bb7c1
# Parent  1b990096bb592c5460024e87477c3352537492c1
Uploaded

diff -r 1b990096bb59 -r 6fd4d3fce229 roary/myTools/roary_tool.xml
--- a/roary/myTools/roary_tool.xml	Thu Apr 18 05:23:39 2019 -0400
+++ b/roary/myTools/roary_tool.xml	Thu Apr 18 05:37:59 2019 -0400
@@ -7,8 +7,8 @@
     
     <command detect_errors="exit_code"><![CDATA[
         
-        #for $counter, $gff in enumerate($gff_input.gffs) sample="$(cut -d'/' -f6 <<<'$gff')" && 
-            cp $gff ${sample}.gff &&
+        #for $counter, $gff in enumerate($gff_input.gffs)
+            cp $gff ${counter}.gff &&
         #end for
                 
         roary