# HG changeset patch
# User jbarberoaparicio
# Date 1555578599 14400
# Node ID fa5639bff74fe72f6674465349c973499c1495f7
# Parent  db0dad5b47d4fc3b10a63395a8bd52612c84f99c
Uploaded

diff -r db0dad5b47d4 -r fa5639bff74f roary/myTools/roary_tool.xml
--- a/roary/myTools/roary_tool.xml	Thu Apr 18 05:05:24 2019 -0400
+++ b/roary/myTools/roary_tool.xml	Thu Apr 18 05:09:59 2019 -0400
@@ -8,7 +8,7 @@
     <command detect_errors="exit_code"><![CDATA[
         
         #for $counter, $gff in enumerate($gff_input.gffs)
-          sample="$(cut -d'/' -f6 <<<'$gff')"
+          sample="$(cut -d'/' -f6 <<<'$gff')" &&
           cp $gff ${sample}.gff &&   
         #end for