Mercurial > repos > jbarberoaparicio > roary

changeset 24:dab8f50594d8 draft

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Uploaded
author jbarberoaparicio
date Thu, 18 Apr 2019 05:19:11 -0400
parents e3eea49a1924
children 1b990096bb59
files roary/myTools/roary_tool.xml
diffstat 1 files changed, 4 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/roary/myTools/roary_tool.xml	Thu Apr 18 05:13:52 2019 -0400
+++ b/roary/myTools/roary_tool.xml	Thu Apr 18 05:19:11 2019 -0400
@@ -7,10 +7,10 @@
     
     <command detect_errors="exit_code"><![CDATA[
         
-        for $counter, $gff in enumerate($gff_input.gffs)
-          sample="$(cut -d'/' -f6 <<<'$gff')" &&
-          cp $gff ${sample}.gff &&   
-        end for
+        #for $counter, $gff in enumerate($gff_input.gffs)
+        #  sample="$(cut -d'/' -f6 <<<'$gff')" &&
+        #  cp $gff ${sample}.gff &&   
+        #end for
                 
         roary
           -f out