Mercurial > repos > jeremie > package_pindel_0_2_5

comparison tool_dependencies.xml @ 20:14facf79b652 draft

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Uploaded
author jeremie
date Fri, 20 Jun 2014 04:52:48 -0400
parents c483e3d493f0
children 7b71d14e0f78
comparison
equal deleted inserted replaced
19:c483e3d493f0 20:14facf79b652
17 <destination_directory>$INSTALL_DIR</destination_directory> 17 <destination_directory>$INSTALL_DIR</destination_directory>
18 </action> 18 </action>
19 <action type="shell_command">unzip pindel-master.zip -d pindel</action> 19 <action type="shell_command">unzip pindel-master.zip -d pindel</action>
20 <action type="shell_command">cd master</action> --> 20 <action type="shell_command">cd master</action> -->
21 <action type="shell_command">sed '50d' Makefile</action> 21 <action type="shell_command">sed '50d' Makefile</action>
22 <action type="shell_command">make Makefile.local</action> 22 <!-- <action type="shell_command">make Makefile.local</action> -->
23 <action type="shell_command">make all SAMTOOLS=~/samtools THREADS=2</action> 23 <action type="shell_command">make SAMTOOLS=~/samtools THREADS=2</action>
24 <!-- <action type="shell_command">./INSTALL ~/samtools</action> --> 24 <!-- <action type="shell_command">./INSTALL ~/samtools</action> -->
25 <action type="move_file"> 25 <action type="move_file">
26 <source>pindel</source> 26 <source>pindel</source>
27 <destination>$INSTALL_DIR/</destination> 27 <destination>$INSTALL_DIR/</destination>
28 </action> 28 </action>