Mercurial > repos > jeremie > package_pindel_0_2_5

comparison tool_dependencies.xml @ 6:3f6014ca8e19 draft

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author jeremie
date Thu, 19 Jun 2014 09:25:22 -0400
parents 4e8cf8b6b572
children 83fe7d36a64d
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5:4e8cf8b6b572 6:3f6014ca8e19
4 <repository changeset_revision="171cd8bc208d" name="package_samtools_0_1_18" owner="devteam" toolshed="http://toolshed.g2.bx.psu.edu" /> 4 <repository changeset_revision="171cd8bc208d" name="package_samtools_0_1_18" owner="devteam" toolshed="http://toolshed.g2.bx.psu.edu" />
5 </package> 5 </package>
6 <package name="pindel" version="0.2.5"> 6 <package name="pindel" version="0.2.5">
7 <install version="1.0"> 7 <install version="1.0">
8 <actions> 8 <actions>
9 <action type="download_by_url">https://github.com/genome/pindel/archive/master.zip</action> 9 <action type="download_by_url" target_filename="pindel-master.zip">https://github.com/genome/pindel/archive/master.zip</action>
10 <action type="shell_command">unzip pindel-master.zip -d pindel</action>
10 <!-- <action type="shell_command">cd pindel</action> 11 <!-- <action type="shell_command">cd pindel</action>
11 <action type="shell_command">make SAMTOOLS=~/samtools</action> --> 12 <action type="shell_command">make SAMTOOLS=~/samtools</action>
13 <action type="move_file">
14 <source>pindel</source>
15 <destination>$INSTALL_DIR/</destination>
16 </action>-->
12 <action type="set_environment"> 17 <action type="set_environment">
13 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable> 18 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
14 </action> 19 </action>
15 </actions> 20 </actions>
16 </install> 21 </install>