Mercurial > repos > jeremie > package_pindel_0_2_5

comparison tool_dependencies.xml @ 5:4e8cf8b6b572 draft

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author jeremie
date Thu, 19 Jun 2014 09:14:25 -0400
parents 8bd563e15467
children 3f6014ca8e19
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4:8bd563e15467 5:4e8cf8b6b572
5 </package> 5 </package>
6 <package name="pindel" version="0.2.5"> 6 <package name="pindel" version="0.2.5">
7 <install version="1.0"> 7 <install version="1.0">
8 <actions> 8 <actions>
9 <action type="download_by_url">https://github.com/genome/pindel/archive/master.zip</action> 9 <action type="download_by_url">https://github.com/genome/pindel/archive/master.zip</action>
10 <action type="shell_command">cd pindel</action> 10 <!-- <action type="shell_command">cd pindel</action>
11 <action type="shell_command">make SAMTOOLS=~/samtools</action> 11 <action type="shell_command">make SAMTOOLS=~/samtools</action> -->
12 <action type="set_environment"> 12 <action type="set_environment">
13 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable> 13 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
14 </action> 14 </action>
15 </actions> 15 </actions>
16 </install> 16 </install>