Mercurial > repos > jeremie > package_pindel_0_2_5

comparison tool_dependencies.xml @ 17:6ae878251e83 draft

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author jeremie
date Thu, 19 Jun 2014 10:43:24 -0400
parents 687a1b9e97b5
children 72ef990f1ace
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16:687a1b9e97b5 17:6ae878251e83
7 <install version="1.0"> 7 <install version="1.0">
8 <actions> 8 <actions>
9 <!-- <action type="shell_command">git clone https://github.com/genome/pindel.git pindel</action> --> 9 <!-- <action type="shell_command">git clone https://github.com/genome/pindel.git pindel</action> -->
10 <action type="download_by_url" target_filename="pindel-master.zip">https://github.com/genome/pindel/archive/master.zip</action> 10 <action type="download_by_url" target_filename="pindel-master.zip">https://github.com/genome/pindel/archive/master.zip</action>
11 <action type="shell_command">ls</action> 11 <action type="shell_command">ls</action>
12 <action type="shell_command">cd ..</action> 12 <!-- <action type="shell_command">cd ..</action>
13 <action type="shell_command">ls</action> 13 <action type="shell_command">ls</action> -->
14 <!-- <action type="move_directory_files"> 14 <!-- <action type="move_directory_files">
15 <source_directory>.</source_directory> 15 <source_directory>.</source_directory>
16 <destination_directory>$INSTALL_DIR</destination_directory> 16 <destination_directory>$INSTALL_DIR</destination_directory>
17 </action> 17 </action>
18 <action type="shell_command">unzip pindel-master.zip -d pindel</action> 18 <action type="shell_command">unzip pindel-master.zip -d pindel</action>