Mercurial > repos > jeremie > package_pindel_0_2_5

comparison tool_dependencies.xml @ 2:754f6ec017f7 draft

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author jeremie
date Thu, 19 Jun 2014 08:56:14 -0400
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1:a419acd3fd50 2:754f6ec017f7
1 <?xml version="1.0"?>
2 <tool_dependency>
3 <package name="samtools" version="0.1.18">
4 <repository changeset_revision="171cd8bc208d" name="package_samtools_0_1_18" owner="devteam" toolshed="http://toolshed.g2.bx.psu.edu" />
5 </package>
6 <package name="pindel" version="0.2.5">
7 <install version="1.0">
8 <actions>
9 <action type="download_by_url">https://github.com/genome/pindel/archive/master.zip</action>
10 <action type="shell_command">unzip pindel-master.zip -d pindel</action>
11 <action type="shell_command">cd pindel</action>
12 <action type="shell_command">make SAMTOOLS=~/samtools</action>
13 <action type="set_environment">
14 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
15 </action>
16 </actions>
17 </install>
18 <readme>
19 </readme>
20 </package>
21 </tool_dependency>