Mercurial > repos > jeremie > package_pindel_0_2_5

comparison tool_dependencies.xml @ 21:7b71d14e0f78 draft

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Uploaded
author jeremie
date Fri, 20 Jun 2014 05:05:25 -0400
parents 14facf79b652
children 2680041530ec
comparison
equal deleted inserted replaced
20:14facf79b652 21:7b71d14e0f78
16 <source_directory>.</source_directory> 16 <source_directory>.</source_directory>
17 <destination_directory>$INSTALL_DIR</destination_directory> 17 <destination_directory>$INSTALL_DIR</destination_directory>
18 </action> 18 </action>
19 <action type="shell_command">unzip pindel-master.zip -d pindel</action> 19 <action type="shell_command">unzip pindel-master.zip -d pindel</action>
20 <action type="shell_command">cd master</action> --> 20 <action type="shell_command">cd master</action> -->
21 <action type="shell_command">sed '50d' Makefile</action> 21 <!-- <action type="shell_command">sed '50d' Makefile</action> -->
22 <!-- <action type="shell_command">make Makefile.local</action> --> 22 <!-- <action type="shell_command">make Makefile.local</action> -->
23 <action type="shell_command">
24 echo "SAMTOOLS=
25 THREADS=
26 COLOUSINGBD15_TIME=60
27 COLOWOBD15_TIME=80
28 SIM1CHRVS20305_TIME=60" >> Makefile.local
29 </action>
23 <action type="shell_command">make SAMTOOLS=~/samtools THREADS=2</action> 30 <action type="shell_command">make SAMTOOLS=~/samtools THREADS=2</action>
24 <!-- <action type="shell_command">./INSTALL ~/samtools</action> --> 31 <!-- <action type="shell_command">./INSTALL ~/samtools</action> -->
32
33
25 <action type="move_file"> 34 <action type="move_file">
26 <source>pindel</source> 35 <source>pindel</source>
27 <destination>$INSTALL_DIR/</destination> 36 <destination>$INSTALL_DIR/</destination>
28 </action> 37 </action>
29 <action type="set_environment"> 38 <action type="set_environment">