Mercurial > repos > jeremie > package_pindel_0_2_5

comparison tool_dependencies.xml @ 19:c483e3d493f0 draft

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Uploaded
author jeremie
date Fri, 20 Jun 2014 04:47:38 -0400
parents 72ef990f1ace
children 14facf79b652
comparison
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18:72ef990f1ace 19:c483e3d493f0
16 <source_directory>.</source_directory> 16 <source_directory>.</source_directory>
17 <destination_directory>$INSTALL_DIR</destination_directory> 17 <destination_directory>$INSTALL_DIR</destination_directory>
18 </action> 18 </action>
19 <action type="shell_command">unzip pindel-master.zip -d pindel</action> 19 <action type="shell_command">unzip pindel-master.zip -d pindel</action>
20 <action type="shell_command">cd master</action> --> 20 <action type="shell_command">cd master</action> -->
21 <action type="shell_command">sed '50d' Makefile</action>
21 <action type="shell_command">make Makefile.local</action> 22 <action type="shell_command">make Makefile.local</action>
22 <action type="shell_command">make all SAMTOOLS=~/samtools THREADS=2</action> 23 <action type="shell_command">make all SAMTOOLS=~/samtools THREADS=2</action>
23 <!-- <action type="shell_command">./INSTALL ~/samtools</action> --> 24 <!-- <action type="shell_command">./INSTALL ~/samtools</action> -->
24 <action type="move_file"> 25 <action type="move_file">
25 <source>pindel</source> 26 <source>pindel</source>