Mercurial > repos > jeremie > package_pindel_0_2_5

comparison tool_dependencies.xml @ 8:c8bdd88ddbba draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author jeremie
date Thu, 19 Jun 2014 09:38:22 -0400
parents 83fe7d36a64d
children 9053dc56c65a
comparison
equal deleted inserted replaced
7:83fe7d36a64d 8:c8bdd88ddbba
5 </package> 5 </package>
6 <package name="pindel" version="0.2.5"> 6 <package name="pindel" version="0.2.5">
7 <install version="1.0"> 7 <install version="1.0">
8 <actions> 8 <actions>
9 <action type="download_by_url" target_filename="pindel-master.zip">https://github.com/genome/pindel/archive/master.zip</action> 9 <action type="download_by_url" target_filename="pindel-master.zip">https://github.com/genome/pindel/archive/master.zip</action>
10 <!--<action type="shell_command">unzip pindel-master.zip -d pindel</action>--> 10 <action type="move_directory_files">
11 <action type="shell_command">cd pindel-master</action> 11 <source_directory>.</source_directory>
12 <destination_directory>$INSTALL_DIR</destination_directory>
13 </action>
14 <action type="shell_command">unzip pindel-master.zip -d pindel</action>-->
15 <action type="shell_command">cd pindel</action>
12 <action type="shell_command">make SAMTOOLS=~/samtools</action> 16 <action type="shell_command">make SAMTOOLS=~/samtools</action>
13 <action type="move_file"> 17 <action type="move_file">
14 <source>pindel</source> 18 <source>pindel</source>
15 <destination>$INSTALL_DIR/</destination> 19 <destination>$INSTALL_DIR/</destination>
16 </action> 20 </action>