Mercurial > repos > jeremie > package_pindel_0_2_5

diff tool_dependencies.xml @ 15:176476c2ce6f draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author jeremie
date Thu, 19 Jun 2014 10:39:06 -0400
parents 9d540c67d888
children 687a1b9e97b5
line wrap: on
line diff
--- a/tool_dependencies.xml	Thu Jun 19 10:30:16 2014 -0400
+++ b/tool_dependencies.xml	Thu Jun 19 10:39:06 2014 -0400
@@ -8,14 +8,14 @@
 			<actions>
 				<!-- <action type="shell_command">git clone https://github.com/genome/pindel.git pindel</action> -->
 				<action type="download_by_url" target_filename="pindel-master.zip">https://github.com/genome/pindel/archive/master.zip</action>
-				<!-- <action type="shell_command">ls</action>
-				<action type="move_directory_files">
+				<action type="shell_command">ls</action>
+				<!-- <action type="move_directory_files">
 					<source_directory>.</source_directory>
 					<destination_directory>$INSTALL_DIR</destination_directory>
 				</action>
 				<action type="shell_command">unzip pindel-master.zip -d pindel</action>
 				<action type="shell_command">cd master</action> -->
-				<action type="shell_command">make all SAMTOOLS=~/samtools</action>
+				<action type="shell_command">make all SAMTOOLS=~/samtools THREADS=2</action>
 				<!-- <action type="shell_command">./INSTALL ~/samtools</action>  -->
 				<action type="move_file">
 					<source>pindel</source>