Mercurial > repos > jeremie > package_pindel_0_2_5

diff tool_dependencies.xml @ 22:2680041530ec draft

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author jeremie
date Fri, 20 Jun 2014 06:28:21 -0400
parents 7b71d14e0f78
children 302ce0e59304
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--- a/tool_dependencies.xml	Fri Jun 20 05:05:25 2014 -0400
+++ b/tool_dependencies.xml	Fri Jun 20 06:28:21 2014 -0400
@@ -1,7 +1,7 @@
 <?xml version="1.0"?>
 <tool_dependency>
 	<package name="samtools" version="0.1.18">
-		<repository changeset_revision="171cd8bc208d" name="package_samtools_0_1_18" owner="devteam" toolshed="http://toolshed.g2.bx.psu.edu" />
+		<repository changeset_revision="171cd8bc208d" name="package_samtools_0_1_18" owner="devteam" toolshed="http://toolshed.g2.bx.psu.edu" prior_installation_required="True" />
 	</package>
 	<package name="pindel" version="0.2.5">
 		<install version="1.0">
@@ -25,7 +25,7 @@
 				THREADS=
 				COLOUSINGBD15_TIME=60
 				COLOWOBD15_TIME=80
-				SIM1CHRVS20305_TIME=60" >> Makefile.local
+				SIM1CHRVS20305_TIME=60" > Makefile.local
 				</action>
 				<action type="shell_command">make SAMTOOLS=~/samtools THREADS=2</action>
 				<!-- <action type="shell_command">./INSTALL ~/samtools</action>  -->