Mercurial > repos > jeremie > package_pindel_0_2_5

diff tool_dependencies.xml @ 6:3f6014ca8e19 draft

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Uploaded
author jeremie
date Thu, 19 Jun 2014 09:25:22 -0400
parents 4e8cf8b6b572
children 83fe7d36a64d
line wrap: on
line diff
--- a/tool_dependencies.xml	Thu Jun 19 09:14:25 2014 -0400
+++ b/tool_dependencies.xml	Thu Jun 19 09:25:22 2014 -0400
@@ -6,9 +6,14 @@
 	<package name="pindel" version="0.2.5">
 		<install version="1.0">
 			<actions>
-				<action type="download_by_url">https://github.com/genome/pindel/archive/master.zip</action>
+				<action type="download_by_url" target_filename="pindel-master.zip">https://github.com/genome/pindel/archive/master.zip</action>
+				<action type="shell_command">unzip pindel-master.zip -d pindel</action>
 				<!-- <action type="shell_command">cd pindel</action>
-				<action type="shell_command">make SAMTOOLS=~/samtools</action> -->
+				<action type="shell_command">make SAMTOOLS=~/samtools</action> 
+				<action type="move_file">
+					<source>pindel</source>
+					<destination>$INSTALL_DIR/</destination>
+				</action>-->
 				<action type="set_environment">
 					<environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
 				</action>