Mercurial > repos > jeremie > package_pindel_0_2_5

diff tool_dependencies.xml @ 7:83fe7d36a64d draft

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Uploaded
author jeremie
date Thu, 19 Jun 2014 09:30:16 -0400
parents 3f6014ca8e19
children c8bdd88ddbba
line wrap: on
line diff
--- a/tool_dependencies.xml	Thu Jun 19 09:25:22 2014 -0400
+++ b/tool_dependencies.xml	Thu Jun 19 09:30:16 2014 -0400
@@ -7,13 +7,13 @@
 		<install version="1.0">
 			<actions>
 				<action type="download_by_url" target_filename="pindel-master.zip">https://github.com/genome/pindel/archive/master.zip</action>
-				<action type="shell_command">unzip pindel-master.zip -d pindel</action>
-				<!-- <action type="shell_command">cd pindel</action>
+				<!--<action type="shell_command">unzip pindel-master.zip -d pindel</action>-->
+				<action type="shell_command">cd pindel-master</action>
 				<action type="shell_command">make SAMTOOLS=~/samtools</action> 
 				<action type="move_file">
 					<source>pindel</source>
 					<destination>$INSTALL_DIR/</destination>
-				</action>-->
+				</action>
 				<action type="set_environment">
 					<environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
 				</action>