Mercurial > repos > jeremie > package_pindel_0_2_5

diff tool_dependencies.xml @ 4:8bd563e15467 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author jeremie
date Thu, 19 Jun 2014 09:05:37 -0400
parents
children 4e8cf8b6b572
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Thu Jun 19 09:05:37 2014 -0400
@@ -0,0 +1,20 @@
+<?xml version="1.0"?>
+<tool_dependency>
+	<package name="samtools" version="0.1.18">
+		<repository changeset_revision="171cd8bc208d" name="package_samtools_0_1_18" owner="devteam" toolshed="http://toolshed.g2.bx.psu.edu" />
+	</package>
+	<package name="pindel" version="0.2.5">
+		<install version="1.0">
+			<actions>
+				<action type="download_by_url">https://github.com/genome/pindel/archive/master.zip</action>
+				<action type="shell_command">cd pindel</action>
+				<action type="shell_command">make SAMTOOLS=~/samtools</action>
+				<action type="set_environment">
+					<environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
+				</action>
+			</actions>
+		</install>
+		<readme>
+		</readme>
+	</package>
+</tool_dependency>