Mercurial > repos > jeremie > package_pindel_0_2_5

diff tool_dependencies.xml @ 27:ae37c0fd6590 draft default tip

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author jeremie
date Fri, 20 Jun 2014 10:40:33 -0400
parents 47817c968422
children
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--- a/tool_dependencies.xml	Fri Jun 20 10:28:26 2014 -0400
+++ b/tool_dependencies.xml	Fri Jun 20 10:40:33 2014 -0400
@@ -31,7 +31,7 @@
 				COLOWOBD15_TIME=80
 				SIM1CHRVS20305_TIME=60" > Makefile.local
 				</action>
-				<action type="shell_command">make SAMTOOLS=$samtools THREADS=2</action>
+				<action type="shell_command">make SAMTOOLS=samtools THREADS=2</action>
 				<action type="move_file">
 					<source>pindel</source>
 					<destination>$INSTALL_DIR/</destination>