# HG changeset patch
# User jeremie
# Date 1403269175 14400
# Node ID 88444ff7009fa214fb6e923f74f8ca6ddba99ccf
# Parent  e01d575b2e15551b6d9f813d2bb4178b5b76104b
Uploaded

diff -r e01d575b2e15 -r 88444ff7009f tool_dependencies.xml
--- a/tool_dependencies.xml	Fri Jun 20 06:32:39 2014 -0400
+++ b/tool_dependencies.xml	Fri Jun 20 08:59:35 2014 -0400
@@ -8,10 +8,8 @@
 			<actions>
 				<!-- <action type="shell_command">git clone https://github.com/genome/pindel.git pindel</action> -->
 				<action type="download_by_url" target_filename="pindel-master.zip">https://github.com/genome/pindel/archive/master.zip</action>
+				<action type="shell_command">ls ..</action>
 				<!-- <action type="shell_command">ls</action> -->
-
-				<!-- <action type="shell_command">cd ..</action>
-				<action type="shell_command">ls</action> -->
 				<!-- <action type="move_directory_files">
 					<source_directory>.</source_directory>
 					<destination_directory>$INSTALL_DIR</destination_directory>
@@ -28,9 +26,6 @@
 				SIM1CHRVS20305_TIME=60" > Makefile.local
 				</action>
 				<action type="shell_command">make SAMTOOLS=~/samtools THREADS=2</action>
-				<!-- <action type="shell_command">./INSTALL ~/samtools</action>  -->
-				
-				
 				<action type="move_file">
 					<source>pindel</source>
 					<destination>$INSTALL_DIR/</destination>