Mercurial > repos > jeremie > package_pindel_0_2_5

changeset 8:c8bdd88ddbba draft

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Uploaded
author jeremie
date Thu, 19 Jun 2014 09:38:22 -0400
parents 83fe7d36a64d
children 9053dc56c65a
files tool_dependencies.xml
diffstat 1 files changed, 6 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Thu Jun 19 09:30:16 2014 -0400
+++ b/tool_dependencies.xml	Thu Jun 19 09:38:22 2014 -0400
@@ -7,8 +7,12 @@
 		<install version="1.0">
 			<actions>
 				<action type="download_by_url" target_filename="pindel-master.zip">https://github.com/genome/pindel/archive/master.zip</action>
-				<!--<action type="shell_command">unzip pindel-master.zip -d pindel</action>-->
-				<action type="shell_command">cd pindel-master</action>
+				<action type="move_directory_files">
+					<source_directory>.</source_directory>
+					<destination_directory>$INSTALL_DIR</destination_directory>
+				</action>
+				<action type="shell_command">unzip pindel-master.zip -d pindel</action>-->
+				<action type="shell_command">cd pindel</action>
 				<action type="shell_command">make SAMTOOLS=~/samtools</action> 
 				<action type="move_file">
 					<source>pindel</source>