Mercurial > repos > jesse-erdmann > tapdance

comparison tapdance_runner.pl @ 3:17ce4f3bffa2 default tip

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Uploaded
author jesse-erdmann
date Tue, 24 Jan 2012 18:33:41 -0500
parents 1437a2df99c0
children
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equal deleted inserted replaced
2:37f15fe01f14 3:17ce4f3bffa2
391 391
392 ### 392 ###
393 # Copy insert files 393 # Copy insert files
394 ### 394 ###
395 if ($copy_ins_files) { 395 if ($copy_ins_files) {
396 #if (defined($projBed)) { 396 if (defined($projBed)) {
397 copy("$envDirN/results/raw_$projName.BED", "$projBed") || die "Unable to retrieve project BED, $envDirN/results/raw_$projName.BED. $!\n";
398 }
397 if (defined($index)) { 399 if (defined($index)) {
398 #copy("$envDirN/results/raw_$projName.BED", "$projBed") || die "Unable to retrieve project BED, $envDirN/results/raw_$projName.BED. $!\n";
399 #print $indexH "<A HREF=\"primary_" . $index_id . "_InsertsBED_hidden_bed?preview=true\">A BED containing all inserts</A><BR>\n"; 400 #print $indexH "<A HREF=\"primary_" . $index_id . "_InsertsBED_hidden_bed?preview=true\">A BED containing all inserts</A><BR>\n";
400 copy("$envDirN/results/raw_$projName.BED", $index_path . "/primary_" . $index_id . "_InsertsBED_visible_bed") || die "Unable to retrieve project BED, $envDirN/results/raw_$projName.BED. $!\n"; 401 copy("$envDirN/results/raw_$projName.BED", $index_path . "/primary_" . $index_id . "_InsertsBED_visible_bed") || die "Unable to retrieve project BED, $envDirN/results/raw_$projName.BED. $!\n";
401 } 402 }
402 if ($debug) { print "Files copied.\n"; } 403 if ($debug) { print "Files copied.\n"; }
403 } 404 }