diff tool_dependencies.xml @ 0:1f0c4f0a9c3b draft

Initial version of SPAN for ToolShed
author jetbrains
date Thu, 15 Nov 2018 11:04:49 -0500
parents
children dfb1e66235c5
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Thu Nov 15 11:04:49 2018 -0500
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+<?xml version="1.0"?>
+<tool_dependency>
+    <!--
+    Package for downloading latest successful development tools.
+    https://galaxyproject.org/toolshed/tool-dependencies-tag-sets/
+    -->
+    <package name="package_span_jar" version="0.7.1.4272" prior_installation_required="True">
+        <install version="1.0">
+            <actions>
+                <action type="download_by_url">https://download.jetbrains.com/biolabs/span/span-0.7.1.4272.jar</action>
+                <action type="move_directory_files">
+                    <source_directory>.</source_directory>
+                    <destination_directory>$INSTALL_DIR/</destination_directory>
+                </action>
+                <!-- Set environment variable $INTEGRATION_JAR so Python script knows where to look -->
+                <action type="set_environment">
+                    <environment_variable name="$SPAN_JAR" action="set_to">$INSTALL_DIR/span-0.7.1.4272.jar</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+            Downloads SPAN Semi-supervised Peak Analyzer jar distribution file.
+        </readme>
+    </package>
+</tool_dependency>