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comparison zinbra.xml @ 7:617b5857ce96

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Snapshot 61f45be of dev repo
author oleg@oleg-desktop.times.labs.intellij.net
date Thu, 29 Oct 2015 11:57:02 +0300
parents 7d532e820976
children
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6:7d532e820976 7:617b5857ce96
1 <tool id="zinbra" name="Zinbra" version="0.0.1"> 1 <tool id="zinbra" name="Zinbra" version="0.0.1">
2 <description>ChIP-Seq enrichment</description> 2 <description>ChIP-Seq analysis</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="0.0.1">epigenome</requirement> 4 <requirement type="package" version="0.0.1">integration_jar</requirement>
5 </requirements> 5 </requirements>
6 <stdio> 6 <stdio>
7 <!-- Wrapper ensures anything other than zero is an error --> 7 <!-- Wrapper ensures anything other than zero is an error -->
8 <exit_code range="1:"/> 8 <exit_code range="1:"/>
9 <exit_code range=":-1"/> 9 <exit_code range=":-1"/>
10 </stdio> 10 </stdio>
11 <command interpreter="python"> 11 <command interpreter="python">
12 #if $action.selection == "analyze" 12 #if $action.selection == "analyze"
13 zinbra.py "${genome}" "${bin}" "${fdr}" analyze "${bed}" 13 zinbra_wrapper.py "${genome}" "${bin}" "${fdr}" analyze "${bed}"
14 #else 14 #else
15 zinbra.py "${genome}" "${bin}" "${fdr}" compare "${bed1}" "${bed2}" 15 zinbra_wrapper.py "${genome}" "${bin}" "${fdr}" compare "${bed1}" "${bed2}"
16 #end if 16 #end if
17 </command> 17 </command>
18 <inputs> 18 <inputs>
19 <param name="genome" type="data" format="fasta" label="Genome build" description="Genome build reference"/> 19 <param name="genome" type="data" format="fasta" label="Genome build" description="Genome build reference"/>
20 <param name="bin" size="5" type="integer" value="200" label="Bin size"/> 20 <param name="bin" size="5" type="integer" value="200" label="Bin size"/>