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+Galaxy Applications
+=================
+
+Quick setup
+------------
+
+* Download local copy of [galaxy](https://wiki.galaxyproject.org/Admin/GetGalaxy)
+* Checkout latest release: `git checkout release_15.01`
+* Create `config/galaxy.ini` as a copy of `config/galaxy.ini.sample`
+* Configure `tools_config_file`, `check_migrate_tools` properties
+* Minimal `tool_conf.xml`
+```
+    <?xml version='1.0' encoding='utf-8'?>
+    <toolbox>
+    <section id="getext" name="Get Data">
+        <tool file="data_source/upload.xml" />
+        <tool file="data_source/ucsc_tablebrowser.xml" />
+        <tool file="data_source/ebi_sra.xml" />
+        <tool file="data_source/biomart.xml" />
+    </section>
+    <section id="jetbrains" name="JetBrains tools">
+        <tool file="<PATH_TO_TOOLS>tools.xml" />
+    </section>
+    </toolbox>
+```
+
+Useful links
+------------
+* Galaxy
+ * [Develop apps](https://wiki.galaxyproject.org/Develop)
+ * [Add tool tutorial](https://wiki.galaxyproject.org/Admin/Tools/AddToolTutorial)
+ * [Tool config format](https://wiki.galaxyproject.org/Admin/Tools/ToolConfigSyntax)
+ * [Quick reStructured text](http://docutils.sourceforge.net/docs/user/rst/quickref.html)
+ * [Main tools Shed resource](https://toolshed.g2.bx.psu.edu/repository)
+ * [Bed tools Shed example](https://github.com/galaxyproject/tools-iuc/blob/master/packages/package_bedtools_2_24/tool_dependencies.xml)
+ * [Biostar Galaxy](https://biostar.usegalaxy.org)
+* Biolabs
+ * Our [homepage](http://beta-research.jetbrains.org/groups/biolabs)
+ * Our [wiki](http://biolabs.intellij.net)
+ * Our NIH powered [genome browser](http://genomebrowser.labs.intellij.net)
+ * [TeamCity](https://teamcity.jetbrains.com/project.html?projectId=Epigenome)