Mercurial > repos > jetbrains > zinbra
diff zinbra.xml @ 0:5f97f28e65ca
Initial commit
author | Oleg Shpynov <oleg.shpynov@gmail.com> |
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date | Tue, 27 Oct 2015 14:20:42 +0300 |
parents | |
children | 8cbb06892b62 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/zinbra.xml Tue Oct 27 14:20:42 2015 +0300 @@ -0,0 +1,26 @@ +<tool id="zinbra" name="Zinbra" version="0.0.1"> + <description>ChIP-Seq enrichment</description> + <requirements> + <requirement type="package" version="0.0.1">epigenome</requirement> + </requirements> + <stdio> + <!-- Wrapper ensures anything other than zero is an error --> + <exit_code range="1:" /> + <exit_code range=":-1" /> + </stdio> + <command interpreter="python"> + zinbra.py "${genome}" "${bed}" "${bin}" "${fdr}" + </command> + <inputs> + <param name="bed" type="data" format="bed" label="Aligned reads" description="BED Aligned reads to process" /> + <param name="genome" type="genomebuild" label="Genome build" description="Genome build used for alignment" /> + <param name="bin" size="5" type="integer" value="200" label="Bin size" /> + <param name="fdr" size="5" type="float" value="0.0001" label="FDR" /> + </inputs> + <outputs> + <data name="result" format="bed" label="result.bed" /> + </outputs> + <help> +Zinbra is a tool for analyzing and comparing ChIP-Seq data using Zero Inflated Negative Binomial Restricted Algorithm. + </help> +</tool>