diff zinbra.xml @ 0:5f97f28e65ca

Initial commit
author Oleg Shpynov <oleg.shpynov@gmail.com>
date Tue, 27 Oct 2015 14:20:42 +0300
parents
children 8cbb06892b62
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/zinbra.xml	Tue Oct 27 14:20:42 2015 +0300
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+<tool id="zinbra" name="Zinbra" version="0.0.1">
+    <description>ChIP-Seq enrichment</description>
+    <requirements>
+        <requirement type="package" version="0.0.1">epigenome</requirement>
+    </requirements>
+    <stdio>
+        <!-- Wrapper ensures anything other than zero is an error -->
+        <exit_code range="1:" />
+        <exit_code range=":-1" />
+    </stdio>
+    <command interpreter="python">
+        zinbra.py "${genome}" "${bed}" "${bin}" "${fdr}"
+    </command>
+    <inputs>
+        <param name="bed" type="data" format="bed" label="Aligned reads" description="BED Aligned reads to process" />
+        <param name="genome" type="genomebuild" label="Genome build" description="Genome build used for alignment" />
+        <param name="bin" size="5" type="integer" value="200" label="Bin size" />
+        <param name="fdr" size="5" type="float" value="0.0001" label="FDR" />
+    </inputs>
+    <outputs>
+        <data name="result" format="bed" label="result.bed" />
+    </outputs>
+    <help>
+Zinbra is a tool for analyzing and comparing ChIP-Seq data using Zero Inflated Negative Binomial Restricted Algorithm.
+    </help>
+</tool>