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changeset 2:0eb50728861a

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Released version: Updated intergration artifact downloading c585add5cb6f16dce315be256f72119fe530e8f5
author oleg@oleg-desktop.times.labs.intellij.net
date Wed, 28 Oct 2015 18:48:43 +0300
parents 8cbb06892b62
children 5a76c80e27c9
files tool_dependencies.xml zinbra.py zinbra.xml
diffstat 3 files changed, 7 insertions(+), 6 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Wed Oct 28 11:28:49 2015 +0300
+++ b/tool_dependencies.xml	Wed Oct 28 18:48:43 2015 +0300
@@ -7,19 +7,20 @@
     <package name="epigenome" version="0.0.1" prior_installation_required="True">
         <install version="1.0">
             <actions>
-                <action type="download_by_url">http://teamcity.jetbrains.com/guestAuth/repository/download/Epigenome_Tools_GenestackIntegration/lastSuccessful/genestack-Dev-all.jar</action>
+                <action type="download_by_url">http://teamcity.jetbrains.com/guestAuth/repository/download/Epigenome_Tools_Integration/lastSuccessful/integration-Dev-all.jar</action>
                 <action type="move_directory_files">
                     <source_directory>.</source_directory>
                     <destination_directory>$INSTALL_DIR/</destination_directory>
                 </action>
-                <!-- Set environment variable $EPIGENOME_JAR so Python script knows where to look -->
+                <!-- Set environment variable $INTEGRATION_JAR so Python script knows where to look -->
                 <action type="set_environment">
-                    <environment_variable name="EPIGENOME_JAR" action="set_to">$INSTALL_DIR/genestack-Dev-all.jar</environment_variable>
+                    <environment_variable name="$INTEGRATION_JAR" action="set_to">$INSTALL_DIR/integration-Dev-all.jar</environment_variable>
                 </action>
             </actions>
         </install>
         <readme>
-            Downloads epigenome integration v0.0.1
+            Downloads epigenome integration JAR.
+            See for more details: https://teamcity.jetbrains.com/project.html?projectId=Epigenome_Tools&tab=projectOverview&guest=1
         </readme>
     </package>
 </tool_dependency>
--- a/zinbra.py	Wed Oct 28 11:28:49 2015 +0300
+++ b/zinbra.py	Wed Oct 28 18:48:43 2015 +0300
@@ -13,7 +13,7 @@
 genome, bed, bin, fdr = argv
 
 # Configure main jar path
-jar = os.environ.get("EPIGENOME_JAR")
+jar = os.environ.get("INTEGRATION_JAR")
 print 'Using JAR distributive file {0}'.format(jar)
 
 cmd = 'java -cp {0} org.jetbrains.bio.genestack.FastaToTwoBitCLA {1} reference.2bit'.format(jar, genome)
--- a/zinbra.xml	Wed Oct 28 11:28:49 2015 +0300
+++ b/zinbra.xml	Wed Oct 28 18:48:43 2015 +0300
@@ -1,4 +1,4 @@
-<tool id="zinbra" name="Zinbra" version="0.0.1">
+<tool id="zinbra123" name="Zinbra123" version="0.0.1">
     <description>ChIP-Seq enrichment</description>
     <requirements>
         <requirement type="package" version="0.0.1">epigenome</requirement>