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1 <tool id="blosum" name="Blosum" version="0.6.0">
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2 <description>Scores for peptide alignment by sequence</description>
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3 <requirements>
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4 <requirement type="package">openjdk</requirement>
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5 </requirements>
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6 <command detect_errors="aggressive"><![CDATA[
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7 java -Djava.awt.headless=true -jar '$__tool_directory__/blosum2.jar'
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8 ]]></command>
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9 <inputs>
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10 <param format="csv" name="input.csv" type="data" label="Peptide Sequences"/>
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11 </inputs>
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12 <outputs>
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13 <data format="csv" name="output.csv" from_work_dir="output.csv" label="peptides with scores.csv"/>
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14 </outputs>
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15 <tests>
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16 <test>
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17 </test>
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18 </tests>
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19
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20
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21 <help><![CDATA[
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22 This does a thing
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23 ]]></help>
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24 <citations>
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25 <citation type="doi">10.1021/ja507164a</citation>
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26 </citations>
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27 </tool>
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