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comparison blosum4galaxy/Blosum.xml @ 0:18232eedb89c draft

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author jfb
date Thu, 25 Oct 2018 15:35:38 -0400
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1 <tool id="blosum" name="Blosum" version="0.6.0">
2 <description>Scores for peptide alignment by sequence</description>
3 <requirements>
4 <requirement type="package">openjdk</requirement>
5 </requirements>
6 <command detect_errors="aggressive"><![CDATA[
7 java -Djava.awt.headless=true -jar '$__tool_directory__/blosum2.jar'
8 ]]></command>
9 <inputs>
10 <param format="csv" name="input.csv" type="data" label="Peptide Sequences"/>
11 </inputs>
12 <outputs>
13 <data format="csv" name="output.csv" from_work_dir="output.csv" label="peptides with scores.csv"/>
14 </outputs>
15 <tests>
16 <test>
17 </test>
18 </tests>
19
20
21 <help><![CDATA[
22 This does a thing
23 ]]></help>
24 <citations>
25 <citation type="doi">10.1021/ja507164a</citation>
26 </citations>
27 </tool>
28