Mercurial > repos > jfb > blosum_toolshed
comparison blosum4galaxy/Blosum.xml @ 6:ff689372d877 draft
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author | jfb |
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date | Tue, 30 Oct 2018 14:35:35 -0400 |
parents | 81da7e8c5ad1 |
children | 99393ba4e816 |
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5:81da7e8c5ad1 | 6:ff689372d877 |
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2 <description>Scores peptides for their terbium binding capability</description> | 2 <description>Scores peptides for their terbium binding capability</description> |
3 <requirements> | 3 <requirements> |
4 <requirement type="package">openjdk</requirement> | 4 <requirement type="package">openjdk</requirement> |
5 </requirements> | 5 </requirements> |
6 <command detect_errors="aggressive"><![CDATA[ | 6 <command detect_errors="aggressive"><![CDATA[ |
7 java -Djava.awt.headless=true -jar '$__tool_directory__/blosum2.jar' '$INPUT' output.csv | 7 java -Djava.awt.headless=true -jar '$__tool_directory__/blosum2.jar' '$INPUT' output |
8 ]]></command> | 8 ]]></command> |
9 <inputs> | 9 <inputs> |
10 <param format="csv" name="INPUT" type="data" label="Peptide Sequences"/> | 10 <param format="csv" name="INPUT" type="data" label="Peptide Sequences"/> |
11 </inputs> | 11 </inputs> |
12 <outputs> | 12 <outputs> |
13 <data format="csv" name="BlosumOutput.csv" from_work_dir="output.csv" label="BlosumOutput.csv"/> | 13 <data format="csv" name="BlosumOutput.csv" from_work_dir="output_1.csv" label="BlosumOutput.csv"/> |
14 </outputs> | 14 </outputs> |
15 <tests> | 15 <tests> |
16 <test> | 16 <test> |
17 </test> | 17 </test> |
18 </tests> | 18 </tests> |