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comparison blosum4galaxy/Blosum.xml @ 6:ff689372d877 draft

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author jfb
date Tue, 30 Oct 2018 14:35:35 -0400
parents 81da7e8c5ad1
children 99393ba4e816
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5:81da7e8c5ad1 6:ff689372d877
2 <description>Scores peptides for their terbium binding capability</description> 2 <description>Scores peptides for their terbium binding capability</description>
3 <requirements> 3 <requirements>
4 <requirement type="package">openjdk</requirement> 4 <requirement type="package">openjdk</requirement>
5 </requirements> 5 </requirements>
6 <command detect_errors="aggressive"><![CDATA[ 6 <command detect_errors="aggressive"><![CDATA[
7 java -Djava.awt.headless=true -jar '$__tool_directory__/blosum2.jar' '$INPUT' output.csv 7 java -Djava.awt.headless=true -jar '$__tool_directory__/blosum2.jar' '$INPUT' output
8 ]]></command> 8 ]]></command>
9 <inputs> 9 <inputs>
10 <param format="csv" name="INPUT" type="data" label="Peptide Sequences"/> 10 <param format="csv" name="INPUT" type="data" label="Peptide Sequences"/>
11 </inputs> 11 </inputs>
12 <outputs> 12 <outputs>
13 <data format="csv" name="BlosumOutput.csv" from_work_dir="output.csv" label="BlosumOutput.csv"/> 13 <data format="csv" name="BlosumOutput.csv" from_work_dir="output_1.csv" label="BlosumOutput.csv"/>
14 </outputs> 14 </outputs>
15 <tests> 15 <tests>
16 <test> 16 <test>
17 </test> 17 </test>
18 </tests> 18 </tests>