Mercurial > repos > jfb > blosum_toolshed
diff blosum4galaxy/Blosum.xml @ 0:18232eedb89c draft
Uploaded
author | jfb |
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date | Thu, 25 Oct 2018 15:35:38 -0400 |
parents | |
children | b2469e2b37be |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/blosum4galaxy/Blosum.xml Thu Oct 25 15:35:38 2018 -0400 @@ -0,0 +1,28 @@ +<tool id="blosum" name="Blosum" version="0.6.0"> + <description>Scores for peptide alignment by sequence</description> + <requirements> + <requirement type="package">openjdk</requirement> + </requirements> + <command detect_errors="aggressive"><![CDATA[ + java -Djava.awt.headless=true -jar '$__tool_directory__/blosum2.jar' + ]]></command> + <inputs> + <param format="csv" name="input.csv" type="data" label="Peptide Sequences"/> + </inputs> + <outputs> + <data format="csv" name="output.csv" from_work_dir="output.csv" label="peptides with scores.csv"/> + </outputs> + <tests> + <test> + </test> + </tests> + + + <help><![CDATA[ +This does a thing + ]]></help> + <citations> + <citation type="doi">10.1021/ja507164a</citation> + </citations> +</tool> +