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view blosum4galaxy/Blosum.xml @ 0:18232eedb89c draft

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author jfb
date Thu, 25 Oct 2018 15:35:38 -0400
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<tool id="blosum" name="Blosum" version="0.6.0">
    <description>Scores for peptide alignment by sequence</description>
    <requirements>
       <requirement type="package">openjdk</requirement>
    </requirements>
    <command detect_errors="aggressive"><![CDATA[        
        java -Djava.awt.headless=true -jar '$__tool_directory__/blosum2.jar'
    ]]></command>
    <inputs>
        <param format="csv" name="input.csv" type="data" label="Peptide Sequences"/>
    </inputs>      
    <outputs>
        <data format="csv" name="output.csv" from_work_dir="output.csv" label="peptides with scores.csv"/>
    </outputs>
    <tests>
        <test>
        </test>
    </tests>

    
    <help><![CDATA[
This does a thing
    ]]></help>
    <citations>
        <citation type="doi">10.1021/ja507164a</citation>
    </citations>
</tool>