Mercurial > repos > jfb > commonality_finder

comparison C and D finder/CandD.xml @ 2:a20e7cc7e0c9 draft

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Uploaded
author jfb
date Fri, 21 Feb 2020 16:38:55 -0500
parents 3e5fdf933646
children 830e8dc3acac
comparison
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1:b791e2bee65c 2:a20e7cc7e0c9
1 <tool id="commonality_r" name="commonality_finder" version="1.0.0"> 1 <tool id="commonality_r" name="commonality_finder" version="1.1.0">
2 <description>finds commonality</description> 2 <description>finds commonality</description>
3 <requirements> 3 <requirements>
4 <requirement type="package">R</requirement> 4 <requirement type="package">R</requirement>
5 </requirements> 5 </requirements>
6 <command><![CDATA[ 6 <command><![CDATA[
9 ln -s '$input3' input3.csv && 9 ln -s '$input3' input3.csv &&
10 ln -s '$input4' input4.csv && 10 ln -s '$input4' input4.csv &&
11 ln -s '$input5' input5.csv && 11 ln -s '$input5' input5.csv &&
12 ln -s '$input6' input6.csv && 12 ln -s '$input6' input6.csv &&
13 13
14 Rscript '$__tool_directory__/CandD.R' NO NO YES 14 Rscript '$__tool_directory__/commonality-working feb 21 20.R'
15 ]]></command> 15 ]]></command>
16 <inputs> 16 <inputs>
17 <param format="csv" name="input1" type="data" label="First Substrate Set"/> 17 <param format="csv" name="input1" type="data" label="First Substrate Set"/>
18 <param format="csv" name="input2" type="data" label="First Substrate Background Frequency"/> 18 <param format="csv" name="input2" type="data" label="First Substrate Background Frequency"/>
19 <param format="csv" name="input3" type="data" label="Second Substrate Set"/> 19 <param format="csv" name="input3" type="data" label="Second Substrate Set"/>