|
9
|
1 #ff you want ONLY FULL MOTIFS, put "YES" here, please use all caps
|
|
|
2 FullMotifsOnly_questionmark<-"NO"
|
|
|
3 #If you want ONLY TRUNCATED MOTIFS, put "YES" here, please use all caps
|
|
|
4 TruncatedMotifsOnly_questionmark<-"NO"
|
|
|
5 #if you want to find the overlap, put a "YES" here (all caps), if you want to find the non-overlap, put "NO" (all caps)
|
|
|
6 Are_You_Looking_For_Commonality<-"NO"
|
|
|
7
|
|
|
8
|
|
|
9 #put the names of your input files here
|
|
|
10 FirstSubstrateSet<- read.csv("S1.csv", stringsAsFactors=FALSE,colClasses = "character")
|
|
|
11 Firstsubbackfreq<- read.csv("SBF1.csv", header=FALSE, stringsAsFactors=FALSE)
|
|
|
12
|
|
|
13 SecondSubstrateSet<- read.csv("S2.csv", stringsAsFactors=FALSE,colClasses = "character")
|
|
|
14 Secondsubbackfreq<- read.csv("SBF2.csv", header=FALSE, stringsAsFactors=FALSE)
|
|
|
15
|
|
|
16
|
|
|
17 First_unshared_motifs_table<-"1RS.csv"
|
|
|
18 First_unshared_subbackfreq<-"1RSBF.csv"
|
|
|
19
|
|
|
20 Second_unshared_motifs_table<-"2RS.csv"
|
|
|
21 Second_unshared_subbackfreq<-"2RSBF.csv"
|
|
|
22
|
|
|
23 EmptySubHeader<-colnames(FirstSubstrateSet)
|
|
|
24 EmptySubHeader<-matrix(EmptySubHeader, nrow=1)
|
|
|
25 EmptySBFHeader<-Firstsubbackfreq[,1]
|
|
|
26
|
|
|
27 #final note, this code is going to be unworkable if you want to make a Venn diagram of more than 3 circles. I think I'll poke around
|
|
|
28 #other languages to see if any of them can do it.
|
|
|
29 ####################################################################################################################################
|
|
|
30
|
|
|
31
|
|
|
32 FirstCentralLetters<-FirstSubstrateSet[,11]
|
|
|
33 SecondCentralLetters<-SecondSubstrateSet[,11]
|
|
|
34
|
|
|
35 FirstEsses<-sapply(FirstCentralLetters, grepl, pattern="S", ignore.case=TRUE)
|
|
|
36 FirstTees<-sapply(FirstCentralLetters, grepl, pattern="T", ignore.case=TRUE)
|
|
|
37 FirstWys<-sapply(FirstCentralLetters, grepl, pattern="Y", ignore.case=TRUE)
|
|
|
38
|
|
|
39 SecondEsses<-sapply(SecondCentralLetters, grepl, pattern="S", ignore.case=TRUE)
|
|
|
40 SecondTees<-sapply(SecondCentralLetters, grepl, pattern="T", ignore.case=TRUE)
|
|
|
41 SecondWys<-sapply(SecondCentralLetters, grepl, pattern="Y", ignore.case=TRUE)
|
|
|
42
|
|
|
43 FirstCentralLetters<-replace(FirstCentralLetters,FirstEsses,"xS")
|
|
|
44 FirstCentralLetters<-replace(FirstCentralLetters,FirstTees,"xT")
|
|
|
45 FirstCentralLetters<-replace(FirstCentralLetters,FirstWys,"xY")
|
|
|
46
|
|
|
47 SecondCentralLetters<-replace(SecondCentralLetters,SecondEsses,"xS")
|
|
|
48 SecondCentralLetters<-replace(SecondCentralLetters,SecondTees,"xT")
|
|
|
49 SecondCentralLetters<-replace(SecondCentralLetters,SecondWys,"xY")
|
|
|
50
|
|
|
51 FirstCentralLetters->FirstSubstrateSet[,11]
|
|
|
52 SecondCentralLetters->SecondSubstrateSet[,11]
|
|
|
53
|
|
|
54 ####################################################################################################################################
|
|
|
55 ####################################################################################################################################
|
|
|
56 # better version of this code written in C: what happens when two kinases share a motif, but they found that motif in two
|
|
|
57 # separate proteins thus two separate accession numbers?
|
|
|
58 # It should actually output the shared motif and BOTH accession numbers. Right now it does not, it only maps out the second
|
|
|
59 # accession number. So that needs to be fixed BUT you need to keep the commonality between a motif and its accession number
|
|
|
60 ####################################################################################################################################
|
|
|
61 ####################################################################################################################################
|
|
|
62 ####################################################################################################################################
|
|
|
63 ####################################################################################################################################
|
|
|
64
|
|
|
65 #Create the motif sets, deciding wether or not you're looking for truncated or full here
|
|
|
66 #full only
|
|
|
67
|
|
|
68
|
|
|
69 ###############################################
|
|
|
70 #ALL motifs, full and truncated
|
|
|
71
|
|
|
72 if (FullMotifsOnly_questionmark!="YES"&&TruncatedMotifsOnly_questionmark!="YES"){
|
|
|
73 FTLwtmotifs=matrix(,nrow = nrow(FirstSubstrateSet),ncol=1)
|
|
|
74 FTLwtAccessionNumbers=matrix(,nrow = nrow(FirstSubstrateSet),ncol=1)
|
|
|
75
|
|
|
76 for (i in 1:nrow(FirstSubstrateSet)){
|
|
|
77 FTLwtletters<-FirstSubstrateSet[i,4:18]
|
|
|
78 FTLwtletters<-FTLwtletters[FTLwtletters !="XXXXX"]
|
|
|
79 FTLwtletters<-paste(FTLwtletters, sep="", collapse="")
|
|
|
80 leftspaces<-c()
|
|
|
81 rightspaces<-c()
|
|
|
82
|
|
|
83 YYYmotif <- unlist(strsplit(FTLwtletters, split = ""))
|
|
|
84 YYYposition <- match(x = "x", table = YYYmotif)
|
|
|
85 #position itself tells me how much is to the left of that X by what it's number is. x at position 4 tells me that there are
|
|
|
86 #just 3 letters to the left of x
|
|
|
87
|
|
|
88 YYYLettersToTheLeft <- YYYposition - 1
|
|
|
89 #how many letters to the right SHOULD just be length(motif)-position-1 if it's 5 long and x is at 3 then Y is at 4 and there is
|
|
|
90 #just 1 spot to the right of Y so LettersToTheRight<-1 because 5-3-1=1
|
|
|
91 YYYLettersToTheRight <- length(YYYmotif) - YYYposition - 1
|
|
|
92 #then sanity check, we're currently looking only at +/-4, but this spot allows for up to +/- 7 as well, just depends on what the
|
|
|
93 #variable the user puts in is
|
|
|
94
|
|
|
95
|
|
|
96 if (YYYLettersToTheLeft < 7 | YYYLettersToTheRight < 7) {
|
|
|
97 leftspaces<-rep(" ",times=(7-YYYLettersToTheLeft))
|
|
|
98 rightspaces<-rep(" ",times=7-(YYYLettersToTheRight))
|
|
|
99 #add blank spaces if the motif has less than 4 letters to the left/right
|
|
|
100 motif<-c(leftspaces,YYYmotif,rightspaces)
|
|
|
101 #save that motif, which is the Y and +/- 4 amino acids, including truncation
|
|
|
102 motif<-motif[!motif %in% "x"]
|
|
|
103 motif<-paste(motif, sep="", collapse="")
|
|
|
104 FTLwtletters<-motif
|
|
|
105 FTLwtmotifs[i,1]<-FTLwtletters
|
|
|
106 FTLwtAccessionNumbers[i,1]<-FirstSubstrateSet[i,3]
|
|
|
107 }
|
|
|
108
|
|
|
109 if(YYYLettersToTheLeft>6 && YYYLettersToTheRight>6){
|
|
|
110 motif<-YYYmotif
|
|
|
111 #add blank spaces if the motif has less than 4 letters to the left/right
|
|
|
112 motif<-c(leftspaces,YYYmotif,rightspaces)
|
|
|
113 #save that motif, which is the Y and +/- 4 amino acids, including truncation
|
|
|
114 motif<-motif[!motif %in% "x"]
|
|
|
115 motif<-paste(motif, sep="", collapse="")
|
|
|
116 FTLwtletters<-motif
|
|
|
117 FTLwtmotifs[i,1]<-FTLwtletters
|
|
|
118 FTLwtAccessionNumbers[i,1]<-FirstSubstrateSet[i,3]
|
|
|
119
|
|
|
120
|
|
|
121 }
|
|
|
122
|
|
|
123 }
|
|
|
124
|
|
|
125 D835Ymotifs=matrix(,nrow = nrow(SecondSubstrateSet),ncol=1)
|
|
|
126 D835YAccessionNumbers<-matrix(,nrow = nrow(SecondSubstrateSet),ncol = 1)
|
|
|
127
|
|
|
128 for (i in 1:nrow(SecondSubstrateSet)){
|
|
|
129 D835letters<-SecondSubstrateSet[i,4:18]
|
|
|
130 D835letters<-D835letters[D835letters !="XXXXX"]
|
|
|
131 D835letters<-paste(D835letters, sep="", collapse="")
|
|
|
132 leftspaces<-c()
|
|
|
133 rightspaces<-c()
|
|
|
134
|
|
|
135 YYYmotif <- unlist(strsplit(D835letters, split = ""))
|
|
|
136 YYYposition <- match(x = "x", table = YYYmotif)
|
|
|
137 #position itself tells me how much is to the left of that X by what it's number is. x at position 4 tells me that there are
|
|
|
138 #just 3 letters to the left of x
|
|
|
139
|
|
|
140 YYYLettersToTheLeft <- YYYposition - 1
|
|
|
141 #how many letters to the right SHOULD just be length(motif)-position-1 if it's 5 long and x is at 3 then Y is at 4 and there is
|
|
|
142 #just 1 spot to the right of Y so LettersToTheRight<-1 because 5-3-1=1
|
|
|
143 YYYLettersToTheRight <- length(YYYmotif) - YYYposition - 1
|
|
|
144 #then sanity check, we're currently looking only at +/-4, but this spot allows for up to +/- 7 as well, just depends on what the
|
|
|
145 #variable the user puts in is
|
|
|
146 if (YYYLettersToTheLeft < 7 | YYYLettersToTheRight < 7) {
|
|
|
147 leftspaces<-rep(" ",times=(7-YYYLettersToTheLeft))
|
|
|
148 rightspaces<-rep(" ",times=7-(YYYLettersToTheRight))
|
|
|
149 #add blank spaces if the motif has less than 4 letters to the left/right
|
|
|
150 motif<-c(leftspaces,YYYmotif,rightspaces)
|
|
|
151 #save that motif, which is the Y and +/- 4 amino acids, including truncation
|
|
|
152 motif<-motif[!motif %in% "x"]
|
|
|
153 motif<-paste(motif, sep="", collapse="")
|
|
|
154 D835letters<-motif
|
|
|
155 D835Ymotifs[i,1]<-D835letters
|
|
|
156 D835YAccessionNumbers[i,1]<-SecondSubstrateSet[i,3]
|
|
|
157 }
|
|
|
158
|
|
|
159 if(YYYLettersToTheLeft>6 && YYYLettersToTheRight>6){
|
|
|
160 motif<-YYYmotif
|
|
|
161 #add blank spaces if the motif has less than 4 letters to the left/right
|
|
|
162 motif<-c(leftspaces,YYYmotif,rightspaces)
|
|
|
163 #save that motif, which is the Y and +/- 4 amino acids, including truncation
|
|
|
164 motif<-motif[!motif %in% "x"]
|
|
|
165 motif<-paste(motif, sep="", collapse="")
|
|
|
166 D835letters<-motif
|
|
|
167 D835Ymotifs[i,1]<-D835letters
|
|
|
168 D835YAccessionNumbers[i,1]<-SecondSubstrateSet[i,3]
|
|
|
169 }
|
|
|
170 }
|
|
|
171
|
|
|
172 names(FTLwtmotifs)<-FTLwtAccessionNumbers
|
|
|
173 names(D835Ymotifs)<-D835YAccessionNumbers
|
|
|
174
|
|
|
175 }
|
|
|
176
|
|
|
177
|
|
|
178 FTLwtmotifsFINAL<-FTLwtmotifs[!FTLwtmotifs %in% D835Ymotifs]
|
|
|
179 FTLwtmotifsFINAL<-FTLwtmotifsFINAL[!duplicated(FTLwtmotifsFINAL)]
|
|
|
180
|
|
|
181 D835YmotifsFINAL<-D835Ymotifs[!D835Ymotifs %in% FTLwtmotifs]
|
|
|
182 D835YmotifsFINAL<-D835YmotifsFINAL[!duplicated(D835YmotifsFINAL)]
|
|
|
183
|
|
|
184
|
|
|
185 columnalheader<-c(rep(NA,36))
|
|
|
186 FTLFinalMatrix<-matrix(data =columnalheader,nrow = 1)
|
|
|
187
|
|
|
188 FLTheader<-c("Substrate","Species","Reference","-7","-6","-5","-4","-3","-2","-1","0","1","2","3","4","5","6","7","Phosphite")
|
|
|
189
|
|
|
190 if (length(FTLwtmotifsFINAL)>0){
|
|
|
191 for (k in 1:length(FTLwtmotifsFINAL)) {
|
|
|
192 AN<-00000
|
|
|
193 #I don't remember why, but I felt it necessary to destroy the accession number multiple times to ensure it is
|
|
|
194 #destroyed immediately after use
|
|
|
195 for (m in 1:ncol(Firstsubbackfreq)) {
|
|
|
196 AN <- as.character(Firstsubbackfreq[1, m])
|
|
|
197 if (grepl(pattern = AN,
|
|
|
198 x = names(FTLwtmotifsFINAL[k]),
|
|
|
199 fixed = TRUE) == TRUE) {
|
|
|
200 outputmatrix <- as.character(Firstsubbackfreq[, m])
|
|
|
201 outputmatrix <- matrix(outputmatrix, nrow = 1)
|
|
|
202 #with that accession number, find a match in the subbackfreq file and save it here
|
|
|
203 FTLFinalMatrix<-rbind(FTLFinalMatrix,outputmatrix)
|
|
|
204 }
|
|
|
205 }
|
|
|
206 }
|
|
|
207 FTLFinalMatrix<-FTLFinalMatrix[!duplicated(FTLFinalMatrix),]
|
|
|
208 FTLFinalMatrix<-FTLFinalMatrix[2:nrow(FTLFinalMatrix),]
|
|
|
209
|
|
|
210
|
|
|
211 FTLoutputmatrix<-matrix(data=c(FTLwtmotifsFINAL,names(FTLwtmotifsFINAL)),ncol = 2)
|
|
|
212 # FLTheader<-unlist(FLTheader)
|
|
|
213 lefthandFLT<-matrix(data = rep(NA,times=2*nrow(FTLoutputmatrix)),nrow=nrow(FTLoutputmatrix))
|
|
|
214 righthandFLT<-matrix(data = rep(NA,times=1*nrow(FTLoutputmatrix)),nrow=nrow(FTLoutputmatrix))
|
|
|
215 FLTaccessionset<-FTLoutputmatrix[,2]
|
|
|
216 FTLmeat<-sapply(FTLoutputmatrix[,1], strsplit, "")
|
|
|
217 FTLmeat<-sapply(FTLmeat, unlist)
|
|
|
218 colnames(FTLmeat)<-NULL
|
|
|
219 FTLmeat<-t(FTLmeat)
|
|
|
220
|
|
|
221 FTLoutputmatrix2<-cbind(lefthandFLT,FLTaccessionset,FTLmeat,righthandFLT)
|
|
|
222 colnames(FTLoutputmatrix2)<-NULL
|
|
|
223 rownames(FTLoutputmatrix2)<-NULL
|
|
|
224 colnames(FLTheader)<-NULL
|
|
|
225 rownames(FLTheader)<-NULL
|
|
|
226
|
|
|
227
|
|
|
228 FirstCentralLettersAGAIN<-FTLoutputmatrix2[,11]
|
|
|
229
|
|
|
230 FirstEsses<-sapply(FirstCentralLettersAGAIN, grepl, pattern="S", ignore.case=TRUE)
|
|
|
231 FirstTees<-sapply(FirstCentralLettersAGAIN, grepl, pattern="T", ignore.case=TRUE)
|
|
|
232 FirstWys<-sapply(FirstCentralLettersAGAIN, grepl, pattern="Y", ignore.case=TRUE)
|
|
|
233
|
|
|
234 FirstCentralLettersAGAIN<-replace(FirstCentralLettersAGAIN,FirstEsses,"xS")
|
|
|
235 FirstCentralLettersAGAIN<-replace(FirstCentralLettersAGAIN,FirstTees,"xT")
|
|
|
236 FirstCentralLettersAGAIN<-replace(FirstCentralLettersAGAIN,FirstWys,"xY")
|
|
|
237
|
|
|
238 FirstCentralLettersAGAIN->FTLoutputmatrix2[,11]
|
|
|
239
|
|
|
240 FTLoutputmatrix2<-rbind(FLTheader,FTLoutputmatrix2)
|
|
|
241
|
|
|
242 write.table(x=FTLoutputmatrix2,
|
|
|
243 file=First_unshared_motifs_table,
|
|
|
244 quote=FALSE, sep=",",
|
|
|
245 row.names=FALSE,col.names = FALSE, na="", append=TRUE)
|
|
|
246
|
|
|
247 columnalheader<-c("Accession Numbers",as.character(Firstsubbackfreq[1:35,1]))
|
|
|
248 columnalheader<-matrix(columnalheader,nrow = 1)
|
|
|
249 write.table(x=columnalheader,
|
|
|
250 file=First_unshared_subbackfreq,
|
|
|
251 quote=FALSE, sep=",",
|
|
|
252 row.names=FALSE,col.names = FALSE, na="", append=TRUE)
|
|
|
253
|
|
|
254 write.table(x=FTLFinalMatrix,
|
|
|
255 file=First_unshared_subbackfreq,
|
|
|
256 quote=FALSE, sep=",",
|
|
|
257 row.names=FALSE,col.names = FALSE, na="", append=TRUE)
|
|
|
258 } else{
|
|
|
259 FTLFinalMatrix<-columnalheader
|
|
|
260 write.table(x=EmptySubHeader,
|
|
|
261 file=First_unshared_motifs_table,
|
|
|
262 quote=FALSE, sep=",",
|
|
|
263 row.names=FALSE,col.names = FALSE, na="", append=TRUE)
|
|
|
264
|
|
|
265 columnalheader<-c("Accession Numbers",as.character(Firstsubbackfreq[1:35,1]))
|
|
|
266 columnalheader<-matrix(columnalheader,nrow = 1)
|
|
|
267 write.table(x=columnalheader,
|
|
|
268 file=First_unshared_subbackfreq,
|
|
|
269 quote=FALSE, sep=",",
|
|
|
270 row.names=FALSE,col.names = FALSE, na="", append=TRUE)
|
|
|
271 }
|
|
|
272
|
|
|
273
|
|
|
274 columnalheader<-c(rep(NA,36))
|
|
|
275 D835YFinalMatrix<-matrix(data =columnalheader,nrow = 1)
|
|
|
276
|
|
|
277 if (length(D835YmotifsFINAL)>0){
|
|
|
278 for (k in 1:length(D835YmotifsFINAL)) {
|
|
|
279 #I don't remember why, but I felt it necessary to destroy the accession number multiple times to ensure it is
|
|
|
280 #destroyed immediately after use
|
|
|
281 for (m in 1:ncol(Secondsubbackfreq)) {
|
|
|
282 AN <- as.character(Secondsubbackfreq[1, m])
|
|
|
283 if (grepl(pattern = AN,
|
|
|
284 x = names(D835YmotifsFINAL[k]),
|
|
|
285 fixed = TRUE) == TRUE) {
|
|
|
286 outputmatrix <- as.character(Secondsubbackfreq[, m])
|
|
|
287 outputmatrix <- matrix(outputmatrix, nrow = 1)
|
|
|
288 #with that accession number, find a match in the subbackfreq file and save it here
|
|
|
289 D835YFinalMatrix<-rbind(D835YFinalMatrix,outputmatrix)
|
|
|
290 }
|
|
|
291 }
|
|
|
292 }
|
|
|
293 D835YFinalMatrix<-D835YFinalMatrix[!duplicated(D835YFinalMatrix),]
|
|
|
294 D835YFinalMatrix<-D835YFinalMatrix[2:nrow(D835YFinalMatrix),]
|
|
|
295
|
|
|
296 D835Youtputmatrix<-matrix(data=c(D835YmotifsFINAL,names(D835YmotifsFINAL)),ncol = 2)
|
|
|
297
|
|
|
298 D835Yheader<-c("Substrate","Species","Reference","-7","-6","-5","-4","-3","-2","-1","0","1","2","3","4","5","6","7","Phosphite")
|
|
|
299 # D835Yheader<-unlist(D835Yheader)
|
|
|
300 lefthandD835<-matrix(data = rep(NA,times=2*nrow(D835Youtputmatrix)),nrow=nrow(D835Youtputmatrix))
|
|
|
301 righthandD835<-matrix(data = rep(NA,times=1*nrow(D835Youtputmatrix)),nrow=nrow(D835Youtputmatrix))
|
|
|
302 D835Yaset<-D835Youtputmatrix[,2]
|
|
|
303 D835meat<-sapply(D835Youtputmatrix[,1], strsplit, "")
|
|
|
304 D835meat<-sapply(D835meat, unlist)
|
|
|
305 colnames(D835meat)<-NULL
|
|
|
306 D835meat<-t(D835meat)
|
|
|
307
|
|
|
308 D835Youtputmatrix2<-cbind(lefthandD835,D835Yaset,D835meat,righthandD835)
|
|
|
309 colnames(D835Youtputmatrix2)<-NULL
|
|
|
310 rownames(D835Youtputmatrix2)<-NULL
|
|
|
311 colnames(D835Yheader)<-NULL
|
|
|
312 rownames(D835Yheader)<-NULL
|
|
|
313
|
|
|
314
|
|
|
315 SecondCentralLettersAGAIN<-D835Youtputmatrix2[,11]
|
|
|
316
|
|
|
317 SecondEsses<-sapply(SecondCentralLettersAGAIN, grepl, pattern="S", ignore.case=TRUE)
|
|
|
318 SecondTees<-sapply(SecondCentralLettersAGAIN, grepl, pattern="T", ignore.case=TRUE)
|
|
|
319 SecondWys<-sapply(SecondCentralLettersAGAIN, grepl, pattern="Y", ignore.case=TRUE)
|
|
|
320
|
|
|
321 SecondCentralLettersAGAIN<-replace(SecondCentralLettersAGAIN,SecondEsses,"xS")
|
|
|
322 SecondCentralLettersAGAIN<-replace(SecondCentralLettersAGAIN,SecondTees,"xT")
|
|
|
323 SecondCentralLettersAGAIN<-replace(SecondCentralLettersAGAIN,SecondWys,"xY")
|
|
|
324
|
|
|
325 SecondCentralLettersAGAIN->D835Youtputmatrix2[,11]
|
|
|
326
|
|
|
327 D835Youtputmatrix2<-rbind(D835Yheader,D835Youtputmatrix2)
|
|
|
328
|
|
|
329 write.table(x=D835Youtputmatrix2,
|
|
|
330 file=Second_unshared_motifs_table,
|
|
|
331 quote=FALSE, sep=",",
|
|
|
332 row.names=FALSE,col.names = FALSE, na="", append=TRUE)
|
|
|
333
|
|
|
334 columnalheader<-c("Accession Numbers",as.character(Firstsubbackfreq[1:35,1]))
|
|
|
335 columnalheader<-matrix(columnalheader,nrow = 1)
|
|
|
336 write.table(x=columnalheader,
|
|
|
337 file=Second_unshared_subbackfreq,
|
|
|
338 quote=FALSE, sep=",",
|
|
|
339 row.names=FALSE,col.names = FALSE, na="", append=TRUE)
|
|
|
340
|
|
|
341 write.table(x=D835YFinalMatrix,
|
|
|
342 file=Second_unshared_subbackfreq,
|
|
|
343 quote=FALSE, sep=",",
|
|
|
344 row.names=FALSE,col.names = FALSE, na="", append=TRUE)
|
|
|
345 } else {
|
|
|
346 D835YFinalMatrix<- columnalheader
|
|
|
347 write.table(x=EmptySubHeader,
|
|
|
348 file=Second_unshared_motifs_table,
|
|
|
349 quote=FALSE, sep=",",
|
|
|
350 row.names=FALSE,col.names = FALSE, na="", append=TRUE)
|
|
|
351
|
|
|
352 columnalheader<-c("Accession Numbers",as.character(Firstsubbackfreq[1:35,1]))
|
|
|
353 columnalheader<-matrix(columnalheader,nrow = 1)
|
|
|
354 write.table(x=columnalheader,
|
|
|
355 file=Second_unshared_subbackfreq,
|
|
|
356 quote=FALSE, sep=",",
|
|
|
357 row.names=FALSE,col.names = FALSE, na="", append=TRUE)
|
|
|
358 } |
