Mercurial > repos > jfb > negative_motif_finder_7_7

comparison NMF/NMF.xml @ 1:a098e1274f63 draft

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author jfb
date Wed, 28 Feb 2018 14:09:56 -0500
parents dd301fc4b54e
children 83c34194a973
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0:dd301fc4b54e 1:a098e1274f63
11 ]]></command> 11 ]]></command>
12 <inputs> 12 <inputs>
13 <param format="csv" name="SBF" type="data" label="Substrate Background Frequency"/> 13 <param format="csv" name="SBF" type="data" label="Substrate Background Frequency"/>
14 <param format="tabular" name="FASTA" type="data" label="Human Proteome Reference"/> 14 <param format="tabular" name="FASTA" type="data" label="Human Proteome Reference"/>
15 <param format="csv" name="positives" type="data" label="Positive/Phosphorylated Substrate List"/> 15 <param format="csv" name="positives" type="data" label="Positive/Phosphorylated Substrate List"/>
16 <param name="outGroup" type="text" value"kinase" label="Kinase Name"/>
16 </inputs> 17 </inputs>
17 <outputs> 18 <outputs>
18 <data format="csv" name="Negatives" from_work_dir="output1.csv" label="Negative Motifs.csv"/> 19 <data format="csv" name="Negatives" from_work_dir="output1.csv" label="${outGroup}_Negative Motifs.csv"/>
19 </outputs> 20 </outputs>
20 <tests> 21 <tests>
21 <test> 22 <test>
22 <param name="FASTA" ftype="csv" value="reference.csv"/> 23 <param name="FASTA" ftype="csv" value="reference.csv"/>
23 <param name="positives" ftype="csv" value="substrates.csv"/> 24 <param name="positives" ftype="csv" value="substrates.csv"/>