--- a/inter.py	Fri Feb 24 17:38:24 2012 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,29 +0,0 @@
-#!/usr/tmp/bin/python2.7
-
-
-import weblogolib
-from corebio.utils.deoptparse import DeOptionParser
-import sys
-
-
-#setup
-def blackboxcodonl(inputf,outputf):
-  parser = weblogolib._build_option_parser()                
-
-  (opts, args) = parser.parse_args(['--size', 'large', '--composition', 'none', '--fin',inputf,'--fout', outputf])
-
-
-  if args : parser.error("Unparsable arguments: %s " % args)
-  #best not to change anything in the try except block.
-  try:
-    data = weblogolib._build_logodata(opts)
-    format = weblogolib._build_logoformat(data, opts)
-    formatter = opts.formatter
-    formatter(data, format, opts.fout)
-  except ValueError, err :
-    print >>sys.stderr, 'Error:', err
-    sys.exit(2)
-  except KeyboardInterrupt, err:
-    sys.exit(0)
-  
-blackboxcodonl('/home/david/examples/cluster17.aln',"outfile.eps")