# HG changeset patch
# User jjalmagro
# Date 1421339294 18000
# Node ID cfb0f4ca979421cf4c541f616ecfebc37c5acfd3
# Parent  8e5b97b272ee3398a606b5989da78110cd37077f
Deleted selected files

diff -r 8e5b97b272ee -r cfb0f4ca9794 findMotif.xml
--- a/findMotif.xml	Thu Jan 15 11:24:45 2015 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,50 +0,0 @@
-<tool id="find_motif" name="findMotif" version="1.0.0">
-  <description>Find specified motif in sequence</description>
-  <command>/steno-internal/projects/galaxy-test/galaxy-dist/tools/findMotifs/findMotif -motif="$motif" "$input1" 
-  #if str( $options_type.options_type_selector ) == "advanced":
-  -chr="${options_type.chr}" 
-  -strand="${options_type.strand} 
-  "${options_type.wigOutput}" 
-  #end if
-  > "$output"
-  </command>
-  <inputs>
-    <param format="fasta" name="input1" type="data" label="Sequences"/>
-    <param name="motif" type="text" value="acgt" size="17" />
-      
-      <conditional name="options_type">
-        <param name="options_type_selector" type="select" label="Options Configuration">
-          <option value="basic" selected="true">Basic</option>
-          <option value="advanced">Advanced</option>
-        </param>
-        <when value="basic">
-          <!-- do nothing here -->
-        </when>
-        <when value="advanced">
-      
-        <param name="chr" size="6" type="integer" value="1" label="Process only this chr from the sequence"/>
-	<param name="strand" type="select" label="Limit to only one strand">
-	  <option value="+">+</option>
-          <option value="-">-</option>
-	</param>
-	<param name="wigOutput" label="Output wiggle data format instead of bed file" type="boolean" truevalue="-wigOutput" falsevalue="" checked="False"/>
-        </when>
-      </conditional>
-  </inputs>
-  <outputs>
-    <data format="bed" name="output" label="${tool.name} on ${on_string} (bed)"/>
-  </outputs>
-
-  <tests>
-    <test>
-      <param name="input1" value="find_motif_input.fa"/>
-      <output name="output" file="find_motif__output.bed"/>
-    </test>
-  </tests>
-
-  <help>
-Find specified motif in a sequence from a FASTA file.
-  </help>
-
-</tool>
-