annotate cpo_snpdist.xml @ 18:596bf8a792de draft

planemo upload
author jjjjia
date Tue, 28 Aug 2018 15:15:09 -0400
parents 698579246d0d
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
5
698579246d0d planemo upload
jjjjia
parents: 1
diff changeset
1 <tool id="cpo_snippy_dist" name="cpo_snippy_dist" version="0.6">
698579246d0d planemo upload
jjjjia
parents: 1
diff changeset
2 <description>modified snippy-dist v0.6 to the tree drawer of the cpo_predictions workflow</description>
698579246d0d planemo upload
jjjjia
parents: 1
diff changeset
3 <requirements>
698579246d0d planemo upload
jjjjia
parents: 1
diff changeset
4 <requirement type="package" version="0.6">snp-dists</requirement>
1
fea89c4d5227 Uploaded
jjjjia
parents:
diff changeset
5 </requirements>
fea89c4d5227 Uploaded
jjjjia
parents:
diff changeset
6 <command detect_errors="exit_code">
fea89c4d5227 Uploaded
jjjjia
parents:
diff changeset
7 <![CDATA[
fea89c4d5227 Uploaded
jjjjia
parents:
diff changeset
8 snp-dists $input > distance.tab
fea89c4d5227 Uploaded
jjjjia
parents:
diff changeset
9 ]]></command>
fea89c4d5227 Uploaded
jjjjia
parents:
diff changeset
10
fea89c4d5227 Uploaded
jjjjia
parents:
diff changeset
11 <inputs>
fea89c4d5227 Uploaded
jjjjia
parents:
diff changeset
12 <param type="data" name="input" format="fasta" />
fea89c4d5227 Uploaded
jjjjia
parents:
diff changeset
13 </inputs>
fea89c4d5227 Uploaded
jjjjia
parents:
diff changeset
14 <outputs>
fea89c4d5227 Uploaded
jjjjia
parents:
diff changeset
15 <data name="distance.tab" format="tabular" from_work_dir="distance.tab"/>
fea89c4d5227 Uploaded
jjjjia
parents:
diff changeset
16 </outputs>
fea89c4d5227 Uploaded
jjjjia
parents:
diff changeset
17 <help>
fea89c4d5227 Uploaded
jjjjia
parents:
diff changeset
18 runs snippy-dist
fea89c4d5227 Uploaded
jjjjia
parents:
diff changeset
19 </help>
fea89c4d5227 Uploaded
jjjjia
parents:
diff changeset
20 <citations>
fea89c4d5227 Uploaded
jjjjia
parents:
diff changeset
21 <citation type="bibtex">
fea89c4d5227 Uploaded
jjjjia
parents:
diff changeset
22 @misc{cpo,
fea89c4d5227 Uploaded
jjjjia
parents:
diff changeset
23 author = {j, j},
fea89c4d5227 Uploaded
jjjjia
parents:
diff changeset
24 year = {2018},
fea89c4d5227 Uploaded
jjjjia
parents:
diff changeset
25 title = {cpo_prediction},
fea89c4d5227 Uploaded
jjjjia
parents:
diff changeset
26 publisher = {j},
fea89c4d5227 Uploaded
jjjjia
parents:
diff changeset
27 journal = {j of j},
fea89c4d5227 Uploaded
jjjjia
parents:
diff changeset
28 url = {https://bfjia.net,
fea89c4d5227 Uploaded
jjjjia
parents:
diff changeset
29 }</citation>
fea89c4d5227 Uploaded
jjjjia
parents:
diff changeset
30 </citations>
fea89c4d5227 Uploaded
jjjjia
parents:
diff changeset
31 </tool>