annotate cpo_rgi.xml @ 3:e6027598a35c draft

planemo upload
author jjjjia
date Mon, 20 Aug 2018 17:53:59 -0400
parents fea89c4d5227
children 698579246d0d
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1
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1 <tool id="rgi" name="rgi" version="4.0.3">
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2 <requirements>
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3 <requirement type="package" version="4.0.3">rgi</requirement>
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4 <requirement type="package" version="2.7">python</requirement>
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5 </requirements>
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6 <command detect_errors="exit_code"><![CDATA[
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7 rgi load -i $__tool_directory__/card202.json --local && rgi main -t contig -a BLAST -i $input -o rgiResult -n "\${GALAXY_SLOTS:-4}" --local --clean
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8 ]]></command>
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9
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10 <inputs>
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11 <param type="data" name="input" format="fasta" />
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12 </inputs>
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13 <outputs>
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14 <data name="rgiResultTsv" format="tabular" from_work_dir="rgiResult.txt"/>
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15 </outputs>
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16 <help>
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17 runs rgi
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18 </help>
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19 <citations>
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20 <citation type="bibtex">
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21 @misc{cpo,
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22 author = {j, j},
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23 year = {2018},
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24 title = {cpo_prediction},
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25 publisher = {j},
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26 journal = {j of j},
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27 url = {https://bfjia.net,
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28 }</citation>
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29 </citations>
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30 </tool>