Mercurial > repos > jjjjia > cpo_prediction

comparison cpo_galaxy_predictions.xml @ 12:4b2738bc81ed draft

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planemo upload
author jjjjia
date Fri, 24 Aug 2018 19:10:42 -0400
parents cabceaa239e4
children a14b12a71a53
comparison
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11:8aaa4001383b 12:4b2738bc81ed
5 <requirement type="package" version="3.6">python</requirement> 5 <requirement type="package" version="3.6">python</requirement>
6 </requirements> 6 </requirements>
7 <command detect_errors="exit_code"> 7 <command detect_errors="exit_code">
8 <![CDATA[ 8 <![CDATA[
9 python '$__tool_directory__/cpo_galaxy_prediction.py' 9 python '$__tool_directory__/cpo_galaxy_prediction.py'
10 '-i $ID' 10 '-i $contig.element_identifier'
11 '-m $mlst' 11 '-m $mlst'
12 '-c $mobsuitecontig' 12 '-c $mobsuitecontig'
13 '-f $mobsuiteaggregate' 13 '-f $mobsuiteaggregate'
14 '-a $abricate' 14 '-a $abricate'
15 '-r $rgi' 15 '-r $rgi'
17 '-s $__tool_directory__/scheme_species_map.tab' 17 '-s $__tool_directory__/scheme_species_map.tab'
18 '-p $plasmidfinder' 18 '-p $plasmidfinder'
19 ]]> 19 ]]>
20 </command> 20 </command>
21 <inputs> 21 <inputs>
22 <param type="text" name="ID"/> 22 <param type="data" name="contig"/>
23 <param type="data" name="mlst" format="tabular" /> 23 <param type="data" name="mlst" format="tabular" />
24 <param type="data" name="mobsuitecontig" format="tabular" /> 24 <param type="data" name="mobsuitecontig" format="tabular" />
25 <param type="data" name="mobsuiteaggregate" format="tabular" /> 25 <param type="data" name="mobsuiteaggregate" format="tabular" />
26 <param type="data" name="abricate" format="tabular" /> 26 <param type="data" name="abricate" format="tabular" />
27 <param type="data" name="rgi" format="tabular" /> 27 <param type="data" name="rgi" format="tabular" />