Mercurial > repos > jjjjia > cpo_prediction

comparison cpo_snippy.xml @ 12:4b2738bc81ed draft

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planemo upload
author jjjjia
date Fri, 24 Aug 2018 19:10:42 -0400
parents 698579246d0d
children
comparison
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11:8aaa4001383b 12:4b2738bc81ed
32 gunzip out/snps.depth.gz 32 gunzip out/snps.depth.gz
33 33
34 && 34 &&
35 35
36 #import re 36 #import re
37 #set $dir_name = re.sub('[^\w_]', '_', $input.element_identifier) 37 #set $dir_name = ($input.element_identifier)
38 mkdir -p ${dir_name}/reference && cp out/snps.tab out/snps.aligned.fa ${dir_name}/ && cp out/reference/ref.fa ${dir_name}/reference/ && 38 mkdir -p ${dir_name}/reference && cp out/snps.tab out/snps.aligned.fa ${dir_name}/ && cp out/reference/ref.fa ${dir_name}/reference/ &&
39 39
40 tar -czf out.tgz ${dir_name} 40 tar -czf out.tgz ${dir_name}
41 41
42 42