Mercurial > repos > jjjjia > cpo_prediction

comparison cpo_galaxy_prediction.py @ 25:573136f142b6 draft

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planemo upload
author jjjjia
date Wed, 29 Aug 2018 15:10:44 -0400
parents e5a7da2239af
children
comparison
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24:e5a7da2239af 25:573136f142b6
692 temp += ";".join(carbapenamases) + "\t" 692 temp += ";".join(carbapenamases) + "\t"
693 temp += ";".join(amrGenes) + "\t" 693 temp += ";".join(amrGenes) + "\t"
694 694
695 #lastly plasmids 695 #lastly plasmids
696 temp += str(plasmidFamily[list(plasmidFamily.keys())[0]].name) + "\t" 696 temp += str(plasmidFamily[list(plasmidFamily.keys())[0]].name) + "\t"
697 temp += str(plasmidFamily[list(plasmidFamily.keys())[0]].identity) + "\t" 697 temp += str(plasmidFamily[list(plasmidFamily.keys())[0]].identity) + "\t"
698 temp += str(plasmidFamily[list(plasmidFamily.keys())[0]].sharedHashes) + "\t" 698 temp += str(plasmidFamily[list(plasmidFamily.keys())[0]].sharedHashes) + "\t"
699 temp+= str(len(mSuitePlasmids)) + "\t" 699 temp+= str(len(mSuitePlasmids)) + "\t"
700 plasmidID = "" 700 plasmidID = ""
701 contigs = "" 701 contigs = ""
702 lengths = "" 702 lengths = ""
703 rep_type = "" 703 rep_type = ""