Mercurial > repos > jjjjia > cpo_prediction

comparison cpo_rgi.xml @ 5:698579246d0d draft

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planemo upload
author jjjjia
date Tue, 21 Aug 2018 17:53:08 -0400
parents fea89c4d5227
children
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4:bd6f5844d60e 5:698579246d0d
1 <tool id="rgi" name="rgi" version="4.0.3"> 1 <tool id="cpo_rgi" name="cpo_rgi" version="4.0.3">
2 <requirements> 2 <description>Modified version of RGI to make it support galaxy without using a datatable by using the --local flag</description>
3 <requirements>
3 <requirement type="package" version="4.0.3">rgi</requirement> 4 <requirement type="package" version="4.0.3">rgi</requirement>
4 <requirement type="package" version="2.7">python</requirement> 5 <requirement type="package" version="2.7">python</requirement>
5 </requirements> 6 </requirements>
6 <command detect_errors="exit_code"><![CDATA[ 7 <command detect_errors="exit_code"><![CDATA[
7 rgi load -i $__tool_directory__/card202.json --local && rgi main -t contig -a BLAST -i $input -o rgiResult -n "\${GALAXY_SLOTS:-4}" --local --clean 8 rgi load -i $__tool_directory__/card202.json --local && rgi main -t contig -a BLAST -i $input -o rgiResult -n "\${GALAXY_SLOTS:-4}" --local --clean